Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rpfG_1Metal dependent phosphohydrolase. (394 aa)    
Predicted Functional Partners:
ydaM_1
Sensory box/GGDEF family protein.
   
 0.949
Lfee_2187
GGDEF/EAL domain-containing sensory box protein.
 
 
 
 0.892
Lfee_1570
Hypothetical protein.
 
     0.833
ycdT
Sensor histidine kinase.
 
 
 0.788
Lfee_1599
GGDEF domain-containing sensory box protein.
 
 
 0.767
cph2_4
Regulatory protein (GGDEF and EAL domains).
 
 
 0.763
cph2_2
Two component response regulator with GGDEF domain protein.
 
   
 0.753
Lfee_0399
Regulatory protein (GGDEF domain).
 
 
 0.747
adrA_1
Two component response regulator with GGDEF domain protein.
 
   
 0.737
pleD
Sensor histidine kinase.
 
 
   0.726
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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