Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lfee_1609Transmembrane protein. (144 aa)    
Predicted Functional Partners:
Lfee_1608
Transmembrane protein.
 
     0.943
dapH
Chloramphenicol acetyltransferase.
   
    0.792
cloSI
Clostripain precursor.
 
    0.567
ndoR
Xylene monooxygenase.
  
     0.448
icmD_1
IcmD (DotP).
       0.445
Lfee_1610
Hypothetical protein.
       0.433
Lfee_2508
Hypothetical protein.
  
     0.433
glbN
Hemoglobin (protozoan/cyanobacterial globin family).
  
     0.430
aaeB
P-hydroxybenzoic acid efflux pump subunit AaeB.
  
     0.428
Lfee_2505
Tn3 transposase DDE domain protein.
  
     0.414
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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