STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lagDToxin secretion ABC transporter HlyB/MsbA family transporter ATP-binding protein. (529 aa)    
Predicted Functional Partners:
Lfee_1634
RND efflux membrane fusion protein.
  0.976
Lfee_1633
Multidrug efflux protein, outer membrane component.
 
 
  0.958
lssD
Secretion system protein D.
 
 0.760
cvaA
Hemolysin D.
 
 0.757
Lfee_1638
Hypothetical protein; Belongs to the UPF0753 family.
 
     0.724
msbA
ABC transporter, ATP binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
    
  0.715
Lfee_1289
Fused transporter subunits of ABC superfamily: ATP-binding component.
    
  0.715
abcT
Fused transporter subunits of ABC superfamily: ATP-binding component.
    
  0.715
lysR
LysR family transporter transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.686
yhiI
Putative efflux pump membrane fusion protein.
  
 0.656
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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