Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
Lfee_1664Polysaccharide deacetylase. (288 aa)    
Predicted Functional Partners:
spkB_3
Protein IcmE (DotG).
  
     0.697
Lfee_2406
Dolichyl-phosphate mannosyltransferase.
 
 
 0.693
Lfee_3043
Hypothetical protein.
  
     0.578
dotA
Defect in organelle trafficking protein DotA.
  
     0.564
arp
Ankyrin repeat domain-containing protein.
  
     0.546
enhA_3
Enhanced entry protein EnhA.
  
     0.541
Lfee_0606
Putative membrane protein YdgA-like protein.
  
     0.535
enhA_2
Enhanced entry protein EnhA.
  
     0.531
Lfee_2292
IcmJ protein.
  
     0.522
Lfee_2873
O-antigen biosynthesis protein.
 
   
 0.506
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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