Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lfee_1689Thaumatin domain-containing protein. (802 aa)    
Predicted Functional Partners:
Lfee_1690
Sporulation related domain protein.
 
     0.768
Lfee_3257
RhoGAP domain protein.
  
     0.748
Lfee_0675
Hypothetical protein.
  
     0.577
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
 0.569
dprE1_2
Cytokinin oxidase.
  
     0.536
iraA_1
Small-molecule methyltransferase IraA.
  
     0.514
Lfee_0306
Hypothetical protein.
  
     0.495
Lfee_0492
Hypothetical protein.
  
  
  0.471
Lfee_3052
Hypothetical protein.
 
  
  0.442
DWF
7-dehydrocholesterol reductase.
  
  
  0.437
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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