STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lfee_1809Hypothetical protein; Belongs to the UPF0102 family. (118 aa)    
Predicted Functional Partners:
lppC
Lipoprotein.
     
 0.755
yraO
DnaA initiator-associating factor for replication initiation.
  
  
 0.752
comM
Competence related protein ComM.
 
  
 0.732
Lfee_1806
Hemolysin, lipoprotein.
       0.720
Lfee_1807
Conserved hypothetical protein; putative periplasmic or secreted lipoprotein.
       0.720
comF
Competence protein ComF.
 
    0.671
yraL
Methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.581
smf
Protein smf.
 
    0.557
cph2_4
Regulatory protein (GGDEF and EAL domains).
   
    0.468
Lfee_1599
GGDEF domain-containing sensory box protein.
   
    0.468
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.