Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lfee_1843Transmembrane protein. (177 aa)    
Predicted Functional Partners:
ybbD
N-acetyl-beta-glucosaminidase.
       0.600
Lfee_0949
Hydrolase/acyltransferase.
  
     0.560
pagP
Palmitoyl transferase for Lipid A; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.
       0.489
fliJ
Flagellar protein FliJ.
  
     0.458
potE_1-2
Amino acid transporter PotE.
       0.448
Lfee_3078
3'-nucleotidase/nuclease.
  
     0.426
fliH
Polar flagellar assembly protein FliH.
  
     0.408
lvrA3
Legionella vir region protein LvrA3.
       0.401
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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