yjgH protein (Legionella feeleii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

yjgH

RutC family protein YjgH. (129 aa)

Predicted Functional Partners:

trpE

0.640

pta

0.587

pheA_1

0.585

pheA_2

0.585

Lfee_1882

0.452

fusA_1

0.445

fusA_2

0.445

Lfee_0500

0.417

yjeF

0.413

yecD

0.400

Your Current Organism:

Legionella feeleii

NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lfee_0500	yjgH	Lfee_0500	Lfee_1881	Asp/Glu/Hydantoin racemase.	RutC family protein YjgH.	0.417
Lfee_1882	yjgH	Lfee_1882	Lfee_1881	Coiled-coil protein.	RutC family protein YjgH.	0.452
fusA_1	yjgH	Lfee_1003	Lfee_1881	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	RutC family protein YjgH.	0.445
fusA_2	yjgH	Lfee_1612	Lfee_1881	Elongation factor G 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	RutC family protein YjgH.	0.445
pheA_1	pheA_2	Lfee_1459	Lfee_2044	P-protein.	Prephenate dehydratase.	0.993
pheA_1	trpE	Lfee_1459	Lfee_0942	P-protein.	Anthranilate synthase.	0.967
pheA_1	yjgH	Lfee_1459	Lfee_1881	P-protein.	RutC family protein YjgH.	0.585
pheA_2	pheA_1	Lfee_2044	Lfee_1459	Prephenate dehydratase.	P-protein.	0.993
pheA_2	trpE	Lfee_2044	Lfee_0942	Prephenate dehydratase.	Anthranilate synthase.	0.967
pheA_2	yjgH	Lfee_2044	Lfee_1881	Prephenate dehydratase.	RutC family protein YjgH.	0.585
pta	yjgH	Lfee_3110	Lfee_1881	Phosphate acetyl/butaryl transferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	RutC family protein YjgH.	0.587
trpE	pheA_1	Lfee_0942	Lfee_1459	Anthranilate synthase.	P-protein.	0.967
trpE	pheA_2	Lfee_0942	Lfee_2044	Anthranilate synthase.	Prephenate dehydratase.	0.967
trpE	yecD	Lfee_0942	Lfee_2327	Anthranilate synthase.	Isochorismatase.	0.533
trpE	yjgH	Lfee_0942	Lfee_1881	Anthranilate synthase.	RutC family protein YjgH.	0.640
yecD	trpE	Lfee_2327	Lfee_0942	Isochorismatase.	Anthranilate synthase.	0.533
yecD	yjeF	Lfee_2327	Lfee_2711	Isochorismatase.	Carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...]	0.606
yecD	yjgH	Lfee_2327	Lfee_1881	Isochorismatase.	RutC family protein YjgH.	0.400
yjeF	yecD	Lfee_2711	Lfee_2327	Carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...]	Isochorismatase.	0.606
yjeF	yjgH	Lfee_2711	Lfee_1881	Carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...]	RutC family protein YjgH.	0.413