Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lfee_0172 | potE_1-2 | Lfee_0172 | Lfee_2038 | Amino acid permease. | Amino acid transporter PotE. | 0.717 |
Lfee_1823 | carB_1 | Lfee_1823 | Lfee_0891 | Serine/threonine protein kinase. | Carbamoyl-phosphate synthase large subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | 0.422 |
Lfee_1823 | pksJ | Lfee_1823 | Lfee_0647 | Serine/threonine protein kinase. | Polyketide synthase module. | 0.466 |
Lfee_1823 | potE_1-2 | Lfee_1823 | Lfee_2038 | Serine/threonine protein kinase. | Amino acid transporter PotE. | 0.704 |
Lfee_2037 | pagP | Lfee_2037 | Lfee_2039 | Proton transporter. | Palmitoyl transferase for Lipid A; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | 0.575 |
Lfee_2037 | potE_1-2 | Lfee_2037 | Lfee_2038 | Proton transporter. | Amino acid transporter PotE. | 0.784 |
carB_1 | Lfee_1823 | Lfee_0891 | Lfee_1823 | Carbamoyl-phosphate synthase large subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | Serine/threonine protein kinase. | 0.422 |
carB_1 | nadE | Lfee_0891 | Lfee_1046 | Carbamoyl-phosphate synthase large subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.636 |
carB_1 | pksJ | Lfee_0891 | Lfee_0647 | Carbamoyl-phosphate synthase large subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | Polyketide synthase module. | 0.598 |
carB_1 | potE_1-2 | Lfee_0891 | Lfee_2038 | Carbamoyl-phosphate synthase large subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | Amino acid transporter PotE. | 0.480 |
hbp | pagP | Lfee_2040 | Lfee_2039 | Hemin binding protein. | Palmitoyl transferase for Lipid A; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | 0.583 |
hbp | potE_1-2 | Lfee_2040 | Lfee_2038 | Hemin binding protein. | Amino acid transporter PotE. | 0.455 |
hbp | tag | Lfee_2040 | Lfee_2041 | Hemin binding protein. | 3-methyladenine DNA glycosylase. | 0.693 |
nadE | carB_1 | Lfee_1046 | Lfee_0891 | Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | Carbamoyl-phosphate synthase large subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | 0.636 |
nadE | pheA_2 | Lfee_1046 | Lfee_2044 | Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | Prephenate dehydratase. | 0.660 |
nadE | pksJ | Lfee_1046 | Lfee_0647 | Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | Polyketide synthase module. | 0.602 |
nadE | potE_1-2 | Lfee_1046 | Lfee_2038 | Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | Amino acid transporter PotE. | 0.708 |
pagP | Lfee_2037 | Lfee_2039 | Lfee_2037 | Palmitoyl transferase for Lipid A; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | Proton transporter. | 0.575 |
pagP | hbp | Lfee_2039 | Lfee_2040 | Palmitoyl transferase for Lipid A; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | Hemin binding protein. | 0.583 |
pagP | potE_1-2 | Lfee_2039 | Lfee_2038 | Palmitoyl transferase for Lipid A; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | Amino acid transporter PotE. | 0.591 |
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