Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lfee_0306 | Lfee_0540 | Lfee_0306 | Lfee_0540 | Hypothetical protein. | Ankyrin repeats (3 copies). | 0.774 |
Lfee_0306 | Lfee_2233 | Lfee_0306 | Lfee_2233 | Hypothetical protein. | Hypothetical protein. | 0.698 |
Lfee_0306 | Lfee_2731 | Lfee_0306 | Lfee_2731 | Hypothetical protein. | Fe-S protein. | 0.769 |
Lfee_0306 | Lfee_2755 | Lfee_0306 | Lfee_2755 | Hypothetical protein. | Hypothetical protein. | 0.769 |
Lfee_0306 | Lfee_3052 | Lfee_0306 | Lfee_3052 | Hypothetical protein. | Hypothetical protein. | 0.778 |
Lfee_0306 | iraA_1 | Lfee_0306 | Lfee_1084 | Hypothetical protein. | Small-molecule methyltransferase IraA. | 0.774 |
Lfee_0306 | lepB_2 | Lfee_0306 | Lfee_3267 | Hypothetical protein. | Effector protein B, substrate of the Dot/Icm secretion system. | 0.774 |
Lfee_0306 | mltA_2 | Lfee_0306 | Lfee_1567 | Hypothetical protein. | Membrane-bound lytic murein transglycosylase A. | 0.746 |
Lfee_0306 | mltA_3 | Lfee_0306 | Lfee_1576 | Hypothetical protein. | Membrane-bound lytic murein transglycosylase A. | 0.748 |
Lfee_0540 | Lfee_0306 | Lfee_0540 | Lfee_0306 | Ankyrin repeats (3 copies). | Hypothetical protein. | 0.774 |
Lfee_0540 | Lfee_2233 | Lfee_0540 | Lfee_2233 | Ankyrin repeats (3 copies). | Hypothetical protein. | 0.710 |
Lfee_0540 | Lfee_2731 | Lfee_0540 | Lfee_2731 | Ankyrin repeats (3 copies). | Fe-S protein. | 0.772 |
Lfee_0540 | Lfee_2755 | Lfee_0540 | Lfee_2755 | Ankyrin repeats (3 copies). | Hypothetical protein. | 0.772 |
Lfee_0540 | Lfee_3052 | Lfee_0540 | Lfee_3052 | Ankyrin repeats (3 copies). | Hypothetical protein. | 0.767 |
Lfee_0540 | iraA_1 | Lfee_0540 | Lfee_1084 | Ankyrin repeats (3 copies). | Small-molecule methyltransferase IraA. | 0.774 |
Lfee_0540 | lepB_2 | Lfee_0540 | Lfee_3267 | Ankyrin repeats (3 copies). | Effector protein B, substrate of the Dot/Icm secretion system. | 0.774 |
Lfee_0540 | mltA_2 | Lfee_0540 | Lfee_1567 | Ankyrin repeats (3 copies). | Membrane-bound lytic murein transglycosylase A. | 0.749 |
Lfee_0540 | mltA_3 | Lfee_0540 | Lfee_1576 | Ankyrin repeats (3 copies). | Membrane-bound lytic murein transglycosylase A. | 0.752 |
Lfee_2232 | Lfee_2233 | Lfee_2232 | Lfee_2233 | XRE family transcriptional regulator. | Hypothetical protein. | 0.878 |
Lfee_2233 | Lfee_0306 | Lfee_2233 | Lfee_0306 | Hypothetical protein. | Hypothetical protein. | 0.698 |
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