Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xerDSite specific recombinase, phage integrase. (408 aa)    
Predicted Functional Partners:
comF
Competence protein ComF.
   
    0.577
pta
Phosphate acetyl/butaryl transferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
  0.534
Lfee_0974
Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.517
yheS_1
Putative ABC transporter ATP-binding protein.
       0.489
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
  0.485
kefC_2
Sodium/hydrogen antiporter.
  
     0.468
dotA
Defect in organelle trafficking protein DotA.
  
     0.467
Lfee_2130
IcmF.
  
     0.442
pilZ
Type IV pilus assembly PilZ.
  
     0.433
Lfee_2292
IcmJ protein.
  
     0.431
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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