Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lfee_2272 | Lfee_2277 | Lfee_2272 | Lfee_2277 | Aspartyl protease. | Putative stress-induced protein. | 0.411 |
Lfee_2272 | gmk | Lfee_2272 | Lfee_2276 | Aspartyl protease. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.411 |
Lfee_2272 | rpoZ | Lfee_2272 | Lfee_2275 | Aspartyl protease. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.473 |
Lfee_2272 | spoT | Lfee_2272 | Lfee_2274 | Aspartyl protease. | Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.800 |
Lfee_2272 | yabJ | Lfee_2272 | Lfee_2273 | Aspartyl protease. | Endoribonuclease L-PSP. | 0.800 |
Lfee_2277 | Lfee_2272 | Lfee_2277 | Lfee_2272 | Putative stress-induced protein. | Aspartyl protease. | 0.411 |
Lfee_2277 | cinA_1 | Lfee_2277 | Lfee_0834 | Putative stress-induced protein. | Competence-damage inducible protein CinA; Belongs to the CinA family. | 0.415 |
Lfee_2277 | coaD | Lfee_2277 | Lfee_0602 | Putative stress-induced protein. | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.616 |
Lfee_2277 | gmk | Lfee_2277 | Lfee_2276 | Putative stress-induced protein. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.917 |
Lfee_2277 | rph | Lfee_2277 | Lfee_2278 | Putative stress-induced protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.645 |
Lfee_2277 | rpoZ | Lfee_2277 | Lfee_2275 | Putative stress-induced protein. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.783 |
Lfee_2277 | spoT | Lfee_2277 | Lfee_2274 | Putative stress-induced protein. | Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.411 |
Lfee_2277 | yabJ | Lfee_2277 | Lfee_2273 | Putative stress-induced protein. | Endoribonuclease L-PSP. | 0.411 |
cinA_1 | Lfee_2277 | Lfee_0834 | Lfee_2277 | Competence-damage inducible protein CinA; Belongs to the CinA family. | Putative stress-induced protein. | 0.415 |
coaD | Lfee_2277 | Lfee_0602 | Lfee_2277 | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Putative stress-induced protein. | 0.616 |
coaD | gmk | Lfee_0602 | Lfee_2276 | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.439 |
gmk | Lfee_2272 | Lfee_2276 | Lfee_2272 | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | Aspartyl protease. | 0.411 |
gmk | Lfee_2277 | Lfee_2276 | Lfee_2277 | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | Putative stress-induced protein. | 0.917 |
gmk | coaD | Lfee_2276 | Lfee_0602 | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.439 |
gmk | rph | Lfee_2276 | Lfee_2278 | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.661 |
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