cspD protein (Legionella feeleii) - STRING interaction network

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Predicted Interactions

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Score

cspD

Cold shock protein CspD. (74 aa)

Predicted Functional Partners:

hemH

0.668

Lfee_1396

0.640

rpoA

0.590

rpoZ

0.589

rpoB

0.588

rplT

0.496

rpsL

0.489

rpmA

0.488

rplS

0.487

rplC

0.476

Your Current Organism:

Legionella feeleii

NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lfee_1396	cspD	Lfee_1396	Lfee_2336	RNA binding protein, cold-inducible rrm.	Cold shock protein CspD.	0.640
Lfee_1396	rpoA	Lfee_1396	Lfee_2446	RNA binding protein, cold-inducible rrm.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.918
Lfee_1396	rpoB	Lfee_1396	Lfee_0999	RNA binding protein, cold-inducible rrm.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.912
Lfee_1396	rpoZ	Lfee_1396	Lfee_2275	RNA binding protein, cold-inducible rrm.	RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.884
cspD	Lfee_1396	Lfee_2336	Lfee_1396	Cold shock protein CspD.	RNA binding protein, cold-inducible rrm.	0.640
cspD	hemH	Lfee_2336	Lfee_2337	Cold shock protein CspD.	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.	0.668
cspD	rplC	Lfee_2336	Lfee_2422	Cold shock protein CspD.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.476
cspD	rplS	Lfee_2336	Lfee_0695	Cold shock protein CspD.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.487
cspD	rplT	Lfee_2336	Lfee_2724	Cold shock protein CspD.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.496
cspD	rpmA	Lfee_2336	Lfee_2180	Cold shock protein CspD.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.488
cspD	rpoA	Lfee_2336	Lfee_2446	Cold shock protein CspD.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.590
cspD	rpoB	Lfee_2336	Lfee_0999	Cold shock protein CspD.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.588
cspD	rpoZ	Lfee_2336	Lfee_2275	Cold shock protein CspD.	RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.589
cspD	rpsL	Lfee_2336	Lfee_1001	Cold shock protein CspD.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.489
hemH	cspD	Lfee_2337	Lfee_2336	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.	Cold shock protein CspD.	0.668
rplC	cspD	Lfee_2422	Lfee_2336	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Cold shock protein CspD.	0.476
rplC	rplS	Lfee_2422	Lfee_0695	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.996
rplC	rplT	Lfee_2422	Lfee_2724	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.997
rplC	rpmA	Lfee_2422	Lfee_2180	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplC	rpoA	Lfee_2422	Lfee_2446	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.995