Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lfee_2344Hypothetical protein. (179 aa)    
Predicted Functional Partners:
Lfee_2345
SURF1 family protein.
 
     0.939
Lfee_2343
Cytochrome c oxidase assembly protein.
 
     0.926
Lfee_2341
SCO1/SenC family transporter protein.
 
     0.898
ctaB
Polyprenyltransferase (cytochrome oxidase assembly factor); Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
     0.887
Lfee_2346
Hypothetical protein.
 
     0.787
rimK_2
Glutathione synthase, ribosomal protein S6 modification protein; Belongs to the RimK family.
       0.675
epsL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.642
dotA
Defect in organelle trafficking protein DotA.
  
     0.605
gst
Glutathione S-transferase; Belongs to the GST superfamily.
       0.575
Lfee_1773
Putative helicase/relaxase.
  
     0.562
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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