Lfee_2377 protein (Legionella feeleii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Lfee_2377

Transporting ATPase. (181 aa)

Predicted Functional Partners:

kamA

0.620

poxA

0.577

Lfee_2378

0.532

ydfJ

0.489

yfcA

0.447

pdxB

0.436

Lfee_0099

0.434

proQ_1

0.408

efp

0.400

Your Current Organism:

Legionella feeleii

NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lfee_0099	Lfee_2377	Lfee_0099	Lfee_2377	Cupin.	Transporting ATPase.	0.434
Lfee_2377	Lfee_0099	Lfee_2377	Lfee_0099	Transporting ATPase.	Cupin.	0.434
Lfee_2377	Lfee_2378	Lfee_2377	Lfee_2378	Transporting ATPase.	Hypothetical protein.	0.532
Lfee_2377	efp	Lfee_2377	Lfee_1957	Transporting ATPase.	Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.	0.400
Lfee_2377	kamA	Lfee_2377	Lfee_1958	Transporting ATPase.	Lysine 2,3-aminomutase.	0.620
Lfee_2377	pdxB	Lfee_2377	Lfee_2632	Transporting ATPase.	Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.	0.436
Lfee_2377	poxA	Lfee_2377	Lfee_2071	Transporting ATPase.	lysyl-tRNA synthetase.	0.577
Lfee_2377	proQ_1	Lfee_2377	Lfee_0972	Transporting ATPase.	ProQ-like, activator of ProP osmoprotectant transporter; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.	0.408
Lfee_2377	ydfJ	Lfee_2377	Lfee_2477	Transporting ATPase.	Membrane protein YdfJ.	0.489
Lfee_2377	yfcA	Lfee_2377	Lfee_0566	Transporting ATPase.	Hypothetical protein.	0.447
Lfee_2378	Lfee_2377	Lfee_2378	Lfee_2377	Hypothetical protein.	Transporting ATPase.	0.532
efp	Lfee_2377	Lfee_1957	Lfee_2377	Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.	Transporting ATPase.	0.400
efp	kamA	Lfee_1957	Lfee_1958	Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.	Lysine 2,3-aminomutase.	0.915
efp	poxA	Lfee_1957	Lfee_2071	Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.	lysyl-tRNA synthetase.	0.957
kamA	Lfee_2377	Lfee_1958	Lfee_2377	Lysine 2,3-aminomutase.	Transporting ATPase.	0.620
kamA	efp	Lfee_1958	Lfee_1957	Lysine 2,3-aminomutase.	Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.	0.915
kamA	poxA	Lfee_1958	Lfee_2071	Lysine 2,3-aminomutase.	lysyl-tRNA synthetase.	0.893
pdxB	Lfee_2377	Lfee_2632	Lfee_2377	Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.	Transporting ATPase.	0.436
poxA	Lfee_2377	Lfee_2071	Lfee_2377	lysyl-tRNA synthetase.	Transporting ATPase.	0.577
poxA	efp	Lfee_2071	Lfee_1957	lysyl-tRNA synthetase.	Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.	0.957