STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbO_2Oxidoreductase with NAD(P)-binding Rossmann-fold domain protein. (233 aa)    
Predicted Functional Partners:
lvr
Oxidoreductase dehydrogenase, short chain; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.712
Lfee_1859
Polyketide synthase module.
  
 
 0.687
phaB_1
Acetyoacetyl CoA reductase.
  
  
  0.680
Lfee_2390
Hypothetical protein.
       0.620
fabG_4
Acetyoacetyl CoA reductase.
  
  
  0.607
fabG_3-2
Pteridine reductase.
  
  
  0.584
Lfee_2374
Acetyltransferase.
  
 
 0.581
fabG_2
3-oxoacyl-ACP reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.560
phaB_2
Acetyoacetyl CoA reductase.
  
  
  0.540
yueD_2
Sepiapterin reductase.
  
  
  0.529
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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