Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ydfJMembrane protein YdfJ. (743 aa)    
Predicted Functional Partners:
Lfee_2478
Hypothetical protein.
       0.773
grsB
Non-ribosomal peptide synthetase.
   
 
 0.746
Lfee_2475
Hypothetical protein.
       0.690
cat_1-2
Chloramphenicol acetyltransferase.
       0.512
Lfee_2474
OmpA-like transmembrane domain protein.
       0.501
Lfee_2377
Transporting ATPase.
       0.489
tycC_2
Peptide synthetase, non-ribosomal.
   
 
 0.478
Lfee_0606
Putative membrane protein YdgA-like protein.
  
     0.437
dotA
Defect in organelle trafficking protein DotA.
  
     0.415
Lfee_1859
Polyketide synthase module.
   
 
 0.409
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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