Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DWF | Lfee_0729 | Lfee_0423 | Lfee_0729 | 7-dehydrocholesterol reductase. | Hypothetical protein. | 0.404 |
DWF | Lfee_2238 | Lfee_0423 | Lfee_2238 | 7-dehydrocholesterol reductase. | Hypothetical protein. | 0.592 |
DWF | Lfee_2239 | Lfee_0423 | Lfee_2239 | 7-dehydrocholesterol reductase. | Hypothetical protein. | 0.666 |
DWF | Lfee_2490 | Lfee_0423 | Lfee_2490 | 7-dehydrocholesterol reductase. | Leucine-rich repeat-containing protein (substrate of the Dot/Icm secretion system). | 0.738 |
Lfee_0729 | DWF | Lfee_0729 | Lfee_0423 | Hypothetical protein. | 7-dehydrocholesterol reductase. | 0.404 |
Lfee_0729 | Lfee_0830 | Lfee_0729 | Lfee_0830 | Hypothetical protein. | Hypothetical protein. | 0.502 |
Lfee_0729 | Lfee_1201 | Lfee_0729 | Lfee_1201 | Hypothetical protein. | Ankyrin repeat protein. | 0.702 |
Lfee_0729 | Lfee_2239 | Lfee_0729 | Lfee_2239 | Hypothetical protein. | Hypothetical protein. | 0.400 |
Lfee_0729 | Lfee_2490 | Lfee_0729 | Lfee_2490 | Hypothetical protein. | Leucine-rich repeat-containing protein (substrate of the Dot/Icm secretion system). | 0.699 |
Lfee_0729 | add_1 | Lfee_0729 | Lfee_1119 | Hypothetical protein. | Adenosine deaminase. | 0.539 |
Lfee_0830 | Lfee_0729 | Lfee_0830 | Lfee_0729 | Hypothetical protein. | Hypothetical protein. | 0.502 |
Lfee_0830 | Lfee_1201 | Lfee_0830 | Lfee_1201 | Hypothetical protein. | Ankyrin repeat protein. | 0.772 |
Lfee_0830 | Lfee_2490 | Lfee_0830 | Lfee_2490 | Hypothetical protein. | Leucine-rich repeat-containing protein (substrate of the Dot/Icm secretion system). | 0.756 |
Lfee_0830 | Lfee_3134 | Lfee_0830 | Lfee_3134 | Hypothetical protein. | Serine/threonine protein kinase. | 0.663 |
Lfee_0830 | add_1 | Lfee_0830 | Lfee_1119 | Hypothetical protein. | Adenosine deaminase. | 0.645 |
Lfee_1201 | Lfee_0729 | Lfee_1201 | Lfee_0729 | Ankyrin repeat protein. | Hypothetical protein. | 0.702 |
Lfee_1201 | Lfee_0830 | Lfee_1201 | Lfee_0830 | Ankyrin repeat protein. | Hypothetical protein. | 0.772 |
Lfee_1201 | Lfee_1823 | Lfee_1201 | Lfee_1823 | Ankyrin repeat protein. | Serine/threonine protein kinase. | 0.708 |
Lfee_1201 | Lfee_2490 | Lfee_1201 | Lfee_2490 | Ankyrin repeat protein. | Leucine-rich repeat-containing protein (substrate of the Dot/Icm secretion system). | 0.758 |
Lfee_1201 | Lfee_3134 | Lfee_1201 | Lfee_3134 | Ankyrin repeat protein. | Serine/threonine protein kinase. | 0.429 |
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