Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pilQType IV pilus (Tfp) assembly protein PilQ. (487 aa)    
Predicted Functional Partners:
pilN
Tfp pilus assembly protein PilN.
 
 
 0.993
pilM
Tfp pilus assembly protein, ATPase PilM.
 
 
 0.983
Lfee_2617
Type IV pilus biogenesis protein PilO.
 
 
 0.976
lspD
Type II protein secretion LspD.
 
  
0.806
outO
Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.791
pilC
Pilus assembly protein PilC.
 
 
 
 0.789
pilE1
Fimbrial protein, type IV pilin, PilE; Belongs to the N-Me-Phe pilin family.
 
   
 0.787
pilB
Pilus assembly protein PilB.
 
 
 
 0.743
pilT
Twitching motility protein PilT.
 
   
 0.676
lspF
Type II secretory pathway protein LspF.
 
 
 
 0.671
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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