Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cysS | trmJ | Lfee_3195 | Lfee_2644 | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | RNA methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.746 |
iscS | mnmC | Lfee_2643 | Lfee_3112 | Cysteine desulfurase NifS. | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. | 0.406 |
iscS | nifU_2 | Lfee_2643 | Lfee_2642 | Cysteine desulfurase NifS. | NifU-like protein. | 0.999 |
iscS | sufA | Lfee_2643 | Lfee_2641 | Cysteine desulfurase NifS. | Fe-S cluster assembly protein; Belongs to the HesB/IscA family. | 0.976 |
iscS | suhB_2 | Lfee_2643 | Lfee_2645 | Cysteine desulfurase NifS. | Inositol-1-monophosphatase. | 0.605 |
iscS | trmJ | Lfee_2643 | Lfee_2644 | Cysteine desulfurase NifS. | RNA methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.785 |
mnmC | iscS | Lfee_3112 | Lfee_2643 | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. | Cysteine desulfurase NifS. | 0.406 |
mnmC | trmJ | Lfee_3112 | Lfee_2644 | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. | RNA methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.406 |
nifU_2 | iscS | Lfee_2642 | Lfee_2643 | NifU-like protein. | Cysteine desulfurase NifS. | 0.999 |
nifU_2 | sufA | Lfee_2642 | Lfee_2641 | NifU-like protein. | Fe-S cluster assembly protein; Belongs to the HesB/IscA family. | 0.937 |
nifU_2 | suhB_2 | Lfee_2642 | Lfee_2645 | NifU-like protein. | Inositol-1-monophosphatase. | 0.637 |
nifU_2 | trmJ | Lfee_2642 | Lfee_2644 | NifU-like protein. | RNA methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.785 |
rnhB | trmJ | Lfee_0526 | Lfee_2644 | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | RNA methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.498 |
rnhB | truB | Lfee_0526 | Lfee_1912 | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.536 |
rrmJ | trmJ | Lfee_1887 | Lfee_2644 | Ribosomal RNA large subunit methyltransferase (cell division protein FtsJ); Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | RNA methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.589 |
rrmJ | truB | Lfee_1887 | Lfee_1912 | Ribosomal RNA large subunit methyltransferase (cell division protein FtsJ); Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.768 |
sufA | iscS | Lfee_2641 | Lfee_2643 | Fe-S cluster assembly protein; Belongs to the HesB/IscA family. | Cysteine desulfurase NifS. | 0.976 |
sufA | nifU_2 | Lfee_2641 | Lfee_2642 | Fe-S cluster assembly protein; Belongs to the HesB/IscA family. | NifU-like protein. | 0.937 |
sufA | suhB_2 | Lfee_2641 | Lfee_2645 | Fe-S cluster assembly protein; Belongs to the HesB/IscA family. | Inositol-1-monophosphatase. | 0.605 |
sufA | trmJ | Lfee_2641 | Lfee_2644 | Fe-S cluster assembly protein; Belongs to the HesB/IscA family. | RNA methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.785 |
page 1 of 2