Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lfee_2849Putative transmembrane protein. (248 aa)    
Predicted Functional Partners:
Lfee_2850
Hypothetical protein.
 
     0.934
Lfee_2848
Putative ABC transport system permease.
  
  0.881
Lfee_2361
Hypothetical protein.
 
     0.772
ttg2D
Toluene tolerance protein Ttg2D.
 
 0.737
ttg2A
Toluene tolerance ABC transporter ATP binding protein Ttg2A.
  
 0.697
ttg2A_2
ABC transporter ATP binding protein.
  
 0.697
Lfee_2664
Transport protein.
  
  0.565
mdtP_2
Outer membrane efflux protein.
  
     0.517
ttg2B
Toluene tolerance protein Ttg2B.
  
 0.515
ttg2B_1
ABC transporter permease.
  
 0.515
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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