Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
yjcCRtn protein. (516 aa)    
Predicted Functional Partners:
ydaM_1
Sensory box/GGDEF family protein.
 0.965
Lfee_2187
GGDEF/EAL domain-containing sensory box protein.
 
    0.953
ycdT
Sensor histidine kinase.
 
  
 0.920
Lfee_0399
Regulatory protein (GGDEF domain).
 
  
 0.912
bioA
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.860
Lfee_2945
Hypothetical protein.
       0.860
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.860
cyaA_2
Fused adenylate cyclase/two component hybrid sensor/regulator.
  
 0.858
cph2_2
Two component response regulator with GGDEF domain protein.
 
 
  0.853
adrA_1
Two component response regulator with GGDEF domain protein.
 
 
  0.848
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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