Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lfee_2966 | Lfee_2967 | Lfee_2966 | Lfee_2967 | TrpH protein. | Two component sensor and regulator histidine kinase response regulator. | 0.568 |
Lfee_2966 | korA | Lfee_2966 | Lfee_2569 | TrpH protein. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.696 |
Lfee_2966 | rluB | Lfee_2966 | Lfee_2961 | TrpH protein. | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.603 |
Lfee_2966 | rnc | Lfee_2966 | Lfee_1432 | TrpH protein. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.889 |
Lfee_2966 | rumA | Lfee_2966 | Lfee_2960 | TrpH protein. | 23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.467 |
Lfee_2966 | scpA | Lfee_2966 | Lfee_2963 | TrpH protein. | Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.603 |
Lfee_2966 | scpB | Lfee_2966 | Lfee_2962 | TrpH protein. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.603 |
Lfee_2966 | trpS | Lfee_2966 | Lfee_2964 | TrpH protein. | tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.603 |
Lfee_2966 | ybeZ | Lfee_2966 | Lfee_2968 | TrpH protein. | Phosphate starvation-inducible protein PhoH. | 0.447 |
Lfee_2966 | yciO | Lfee_2966 | Lfee_2965 | TrpH protein. | Translation factor; Belongs to the SUA5 family. | 0.844 |
Lfee_2967 | Lfee_2966 | Lfee_2967 | Lfee_2966 | Two component sensor and regulator histidine kinase response regulator. | TrpH protein. | 0.568 |
Lfee_2967 | ybeZ | Lfee_2967 | Lfee_2968 | Two component sensor and regulator histidine kinase response regulator. | Phosphate starvation-inducible protein PhoH. | 0.573 |
Lfee_2967 | yciO | Lfee_2967 | Lfee_2965 | Two component sensor and regulator histidine kinase response regulator. | Translation factor; Belongs to the SUA5 family. | 0.559 |
korA | Lfee_2966 | Lfee_2569 | Lfee_2966 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | TrpH protein. | 0.696 |
rluB | Lfee_2966 | Lfee_2961 | Lfee_2966 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | TrpH protein. | 0.603 |
rluB | rumA | Lfee_2961 | Lfee_2960 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.607 |
rluB | scpA | Lfee_2961 | Lfee_2963 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.839 |
rluB | scpB | Lfee_2961 | Lfee_2962 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.915 |
rluB | trpS | Lfee_2961 | Lfee_2964 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.800 |
rluB | ybeZ | Lfee_2961 | Lfee_2968 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Phosphate starvation-inducible protein PhoH. | 0.436 |
page 1 of 3