STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lfee_2980Tfp type 4 fimbrial pilin related signal peptide protein domain protein. (159 aa)    
Predicted Functional Partners:
Lfee_2981
Bacteriophage-like DNA polymerase.
       0.800
gspH
General secretion pathway protein LspH.
 
  
 0.578
comA
DNA uptake/competence protein ComA.
 
   
 0.562
Lfee_1411
Hypothetical protein.
  
  
 0.559
lspI
Type II secretory pathway protein LspI.
 
  
 0.545
pilM
Tfp pilus assembly protein, ATPase PilM.
 
   
 0.529
Lfee_2599
Hypothetical protein.
  
  
 0.518
Lfee_2617
Type IV pilus biogenesis protein PilO.
 
   
 0.500
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
       0.494
arnB
Aminotransferase WecE; Belongs to the DegT/DnrJ/EryC1 family.
       0.494
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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