Lfee_3018 protein (Legionella feeleii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Lfee_3018

Murein L,D-transpeptidase. (402 aa)

Predicted Functional Partners:

Lfee_0973

0.602

lssA

0.553

ynhG

0.544

Lfee_1137

0.509

ribD

0.489

Lfee_3016

0.442

Lfee_3017

0.442

Your Current Organism:

Legionella feeleii

NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lfee_0973	Lfee_3018	Lfee_0973	Lfee_3018	Hypothetical protein.	Murein L,D-transpeptidase.	0.602
Lfee_1137	Lfee_3018	Lfee_1137	Lfee_3018	Hypothetical protein.	Murein L,D-transpeptidase.	0.509
Lfee_3016	Lfee_3017	Lfee_3016	Lfee_3017	6-pyruvoyl tetrahydropterin synthase.	Hypothetical protein.	0.773
Lfee_3016	Lfee_3018	Lfee_3016	Lfee_3018	6-pyruvoyl tetrahydropterin synthase.	Murein L,D-transpeptidase.	0.442
Lfee_3017	Lfee_3016	Lfee_3017	Lfee_3016	Hypothetical protein.	6-pyruvoyl tetrahydropterin synthase.	0.773
Lfee_3017	Lfee_3018	Lfee_3017	Lfee_3018	Hypothetical protein.	Murein L,D-transpeptidase.	0.442
Lfee_3018	Lfee_0973	Lfee_3018	Lfee_0973	Murein L,D-transpeptidase.	Hypothetical protein.	0.602
Lfee_3018	Lfee_1137	Lfee_3018	Lfee_1137	Murein L,D-transpeptidase.	Hypothetical protein.	0.509
Lfee_3018	Lfee_3016	Lfee_3018	Lfee_3016	Murein L,D-transpeptidase.	6-pyruvoyl tetrahydropterin synthase.	0.442
Lfee_3018	Lfee_3017	Lfee_3018	Lfee_3017	Murein L,D-transpeptidase.	Hypothetical protein.	0.442
Lfee_3018	lssA	Lfee_3018	Lfee_3135	Murein L,D-transpeptidase.	Legionella secretion system protein A.	0.553
Lfee_3018	ribD	Lfee_3018	Lfee_1118	Murein L,D-transpeptidase.	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.	0.489
Lfee_3018	ynhG	Lfee_3018	Lfee_3051	Murein L,D-transpeptidase.	Putative ErfK/YbiS/YcfS/YnhG family protein precursor.	0.544
lssA	Lfee_3018	Lfee_3135	Lfee_3018	Legionella secretion system protein A.	Murein L,D-transpeptidase.	0.553
ribD	Lfee_3018	Lfee_1118	Lfee_3018	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.	Murein L,D-transpeptidase.	0.489
ynhG	Lfee_3018	Lfee_3051	Lfee_3018	Putative ErfK/YbiS/YcfS/YnhG family protein precursor.	Murein L,D-transpeptidase.	0.544