dedA protein (Legionella feeleii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

dedA

DedA family protein. (220 aa)

Predicted Functional Partners:

flgC

0.564

zraS

0.510

fliG

0.456

qseF

0.424

fliF

0.423

mtfA

0.414

Your Current Organism:

Legionella feeleii

NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dedA	flgC	Lfee_3034	Lfee_0214	DedA family protein.	Flagellar basal body rod protein FlgC.	0.564
dedA	fliF	Lfee_3034	Lfee_3030	DedA family protein.	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.423
dedA	fliG	Lfee_3034	Lfee_3029	DedA family protein.	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	0.456
dedA	mtfA	Lfee_3034	Lfee_1684	DedA family protein.	Protein MtfA; Belongs to the MtfA family.	0.414
dedA	qseF	Lfee_3034	Lfee_3032	DedA family protein.	Sigma 54-dependent response regulator.	0.424
dedA	zraS	Lfee_3034	Lfee_3033	DedA family protein.	Sensor kinase HydH.	0.510
flgC	dedA	Lfee_0214	Lfee_3034	Flagellar basal body rod protein FlgC.	DedA family protein.	0.564
flgC	fliF	Lfee_0214	Lfee_3030	Flagellar basal body rod protein FlgC.	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.998
flgC	fliG	Lfee_0214	Lfee_3029	Flagellar basal body rod protein FlgC.	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	0.987
flgC	qseF	Lfee_0214	Lfee_3032	Flagellar basal body rod protein FlgC.	Sigma 54-dependent response regulator.	0.577
fliF	dedA	Lfee_3030	Lfee_3034	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	DedA family protein.	0.423
fliF	flgC	Lfee_3030	Lfee_0214	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar basal body rod protein FlgC.	0.998
fliF	fliG	Lfee_3030	Lfee_3029	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	0.999
fliF	qseF	Lfee_3030	Lfee_3032	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Sigma 54-dependent response regulator.	0.822
fliF	zraS	Lfee_3030	Lfee_3033	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Sensor kinase HydH.	0.643
fliG	dedA	Lfee_3029	Lfee_3034	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	DedA family protein.	0.456
fliG	flgC	Lfee_3029	Lfee_0214	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	Flagellar basal body rod protein FlgC.	0.987
fliG	fliF	Lfee_3029	Lfee_3030	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.999
fliG	qseF	Lfee_3029	Lfee_3032	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	Sigma 54-dependent response regulator.	0.835
fliG	zraS	Lfee_3029	Lfee_3033	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	Sensor kinase HydH.	0.659