dedA protein (Legionella feeleii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

dedA

DedA family protein. (220 aa)

Predicted Functional Partners:

zraS

0.508

fliG

0.489

mtfA

0.486

fliF

0.446

qseF

0.438

Your Current Organism:

Legionella feeleii

NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dedA	fliF	Lfee_3034	Lfee_3030	DedA family protein.	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.446
dedA	fliG	Lfee_3034	Lfee_3029	DedA family protein.	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	0.489
dedA	mtfA	Lfee_3034	Lfee_1684	DedA family protein.	Protein MtfA; Belongs to the MtfA family.	0.486
dedA	qseF	Lfee_3034	Lfee_3032	DedA family protein.	Sigma 54-dependent response regulator.	0.438
dedA	zraS	Lfee_3034	Lfee_3033	DedA family protein.	Sensor kinase HydH.	0.508
fliF	dedA	Lfee_3030	Lfee_3034	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	DedA family protein.	0.446
fliF	fliG	Lfee_3030	Lfee_3029	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	0.999
fliF	qseF	Lfee_3030	Lfee_3032	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Sigma 54-dependent response regulator.	0.747
fliF	zraS	Lfee_3030	Lfee_3033	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Sensor kinase HydH.	0.745
fliG	dedA	Lfee_3029	Lfee_3034	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	DedA family protein.	0.489
fliG	fliF	Lfee_3029	Lfee_3030	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.999
fliG	qseF	Lfee_3029	Lfee_3032	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	Sigma 54-dependent response regulator.	0.746
fliG	zraS	Lfee_3029	Lfee_3033	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	Sensor kinase HydH.	0.745
mtfA	dedA	Lfee_1684	Lfee_3034	Protein MtfA; Belongs to the MtfA family.	DedA family protein.	0.486
qseF	dedA	Lfee_3032	Lfee_3034	Sigma 54-dependent response regulator.	DedA family protein.	0.438
qseF	fliF	Lfee_3032	Lfee_3030	Sigma 54-dependent response regulator.	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.747
qseF	fliG	Lfee_3032	Lfee_3029	Sigma 54-dependent response regulator.	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	0.746
qseF	zraS	Lfee_3032	Lfee_3033	Sigma 54-dependent response regulator.	Sensor kinase HydH.	0.995
zraS	dedA	Lfee_3033	Lfee_3034	Sensor kinase HydH.	DedA family protein.	0.508
zraS	fliF	Lfee_3033	Lfee_3030	Sensor kinase HydH.	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.745