Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lfee_3097 | engA | Lfee_3097 | Lfee_3099 | Transmembrane protein. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.821 |
Lfee_3097 | hisS | Lfee_3097 | Lfee_3096 | Transmembrane protein. | histidyl-tRNA synthetase. | 0.953 |
Lfee_3097 | pilF | Lfee_3097 | Lfee_3094 | Transmembrane protein. | Fimbrial biogenesis and twitching motility protein PilF. | 0.804 |
Lfee_3097 | rodZ | Lfee_3097 | Lfee_3095 | Transmembrane protein. | DNA-binding protein. | 0.820 |
Lfee_3097 | smpA | Lfee_3097 | Lfee_2469 | Transmembrane protein. | tmRNA-binding small protein A. | 0.533 |
Lfee_3097 | surA | Lfee_3097 | Lfee_2259 | Transmembrane protein. | Peptidyl-prolyl cis-trans isomerase D. | 0.491 |
Lfee_3097 | surA_2 | Lfee_3097 | Lfee_3189 | Transmembrane protein. | Peptidyl-prolyl cis-trans isomerase D; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation. | 0.470 |
Lfee_3097 | yfgL | Lfee_3097 | Lfee_3098 | Transmembrane protein. | PQQ (pyrrolo quinoline) WD40-like repeat, enzyme repeat domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.960 |
comL | smpA | Lfee_0915 | Lfee_2469 | Competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | tmRNA-binding small protein A. | 0.974 |
comL | surA | Lfee_0915 | Lfee_2259 | Competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Peptidyl-prolyl cis-trans isomerase D. | 0.499 |
comL | surA_2 | Lfee_0915 | Lfee_3189 | Competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Peptidyl-prolyl cis-trans isomerase D; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation. | 0.498 |
comL | yaeT | Lfee_0915 | Lfee_2205 | Competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.985 |
comL | yfgL | Lfee_0915 | Lfee_3098 | Competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | PQQ (pyrrolo quinoline) WD40-like repeat, enzyme repeat domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.971 |
engA | Lfee_3097 | Lfee_3099 | Lfee_3097 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Transmembrane protein. | 0.821 |
engA | hisS | Lfee_3099 | Lfee_3096 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | histidyl-tRNA synthetase. | 0.792 |
engA | pilF | Lfee_3099 | Lfee_3094 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Fimbrial biogenesis and twitching motility protein PilF. | 0.746 |
engA | rodZ | Lfee_3099 | Lfee_3095 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | DNA-binding protein. | 0.749 |
engA | yfgL | Lfee_3099 | Lfee_3098 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | PQQ (pyrrolo quinoline) WD40-like repeat, enzyme repeat domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.827 |
hisS | Lfee_3097 | Lfee_3096 | Lfee_3097 | histidyl-tRNA synthetase. | Transmembrane protein. | 0.953 |
hisS | engA | Lfee_3096 | Lfee_3099 | histidyl-tRNA synthetase. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.792 |
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