Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xerC_2Hypothetical protein; Belongs to the 'phage' integrase family. (291 aa)    
Predicted Functional Partners:
Lfee_3272
Tn3 transposase DDE domain protein.
       0.773
fimB_1
Type 1 fimbriae regulatory protein FimB; Belongs to the 'phage' integrase family.
  
     0.760
fimB_2
Type 1 fimbriae regulatory protein FimB.
  
     0.760
Lfee_3273
Hypothetical protein.
       0.678
ftsK
Cell division protein FtsK.
  
   
 0.630
recR
Recombinational DNA repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
   
 0.587
comF
Competence protein ComF.
   
    0.577
parB_3
Partition protein ParB; Belongs to the ParB family.
  
    0.556
Lfee_3270
Hypothetical protein.
       0.546
pta
Phosphate acetyl/butaryl transferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
  0.534
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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