STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAN56445.1Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)    
Predicted Functional Partners:
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
    0.847
OAN52565.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  0.845
OAN53528.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.835
OAN53606.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.773
OAN57883.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.773
OAN59182.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.771
OAN56465.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.767
OAN56484.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.767
OAN58922.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.767
OAN57888.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.767
Your Current Organism:
Sphingobium sp. TCM1
NCBI taxonomy Id: 453246
Other names: S. sp. TCM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.