STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAN58746.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)    
Predicted Functional Partners:
OAN58747.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.565
OAN58791.1
DDE endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.552
OAN58683.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.538
OAN54873.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.536
OAN58783.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.525
OAN58684.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.493
OAN53485.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.448
OAN58790.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.418
OAN58748.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
       0.405
Your Current Organism:
Sphingobium sp. TCM1
NCBI taxonomy Id: 453246
Other names: S. sp. TCM1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.