STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3L1Y9_ORYBRRRM domain-containing protein. (555 aa)    
Predicted Functional Partners:
J3LEP4_ORYBR
Nuclear cap-binding protein subunit 2.
    
 0.622
J3LIS5_ORYBR
RRM domain-containing protein.
   
 0.618
J3LNQ4_ORYBR
MIF4G domain-containing protein.
   
 0.559
J3L9X2_ORYBR
Uncharacterized protein.
    
 0.528
J3N6L5_ORYBR
Uncharacterized protein.
   
 
  0.489
J3NBV7_ORYBR
Uncharacterized protein.
   
 
  0.489
J3L4J1_ORYBR
TFIIF_beta domain-containing protein.
   
 
  0.482
J3LZS0_ORYBR
Uncharacterized protein.
    
 0.482
J3M8R4_ORYBR
Uncharacterized protein.
   
 
  0.482
J3N3N1_ORYBR
G-patch domain-containing protein.
    
 0.482
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.