J3L2F6_ORYBR protein (Oryza brachyantha) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

J3L2F6_ORYBR

Peptidase_M50 domain-containing protein. (531 aa)

Predicted Functional Partners:

J3LWK8_ORYBR

0.671

J3N1A7_ORYBR

0.671

J3M816_ORYBR

0.641

J3M8R6_ORYBR

0.641

J3N5C8_ORYBR

0.641

J3NAN5_ORYBR

0.641

J3MBK0_ORYBR

0.569

J3MFY4_ORYBR

0.546

J3L600_ORYBR

0.543

J3L6E8_ORYBR

0.543

Your Current Organism:

Oryza brachyantha

NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
J3L2F6_ORYBR	J3L600_ORYBR	J3L2F6	J3L600	Peptidase_M50 domain-containing protein.	Alkyl transferase; Belongs to the UPP synthase family.	0.543
J3L2F6_ORYBR	J3L6E8_ORYBR	J3L2F6	J3L6E8	Peptidase_M50 domain-containing protein.	Dirigent protein; Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	0.543
J3L2F6_ORYBR	J3LWK8_ORYBR	J3L2F6	J3LWK8	Peptidase_M50 domain-containing protein.	BHLH domain-containing protein.	0.671
J3L2F6_ORYBR	J3M816_ORYBR	J3L2F6	J3M816	Peptidase_M50 domain-containing protein.	Uncharacterized protein.	0.641
J3L2F6_ORYBR	J3M8R6_ORYBR	J3L2F6	J3M8R6	Peptidase_M50 domain-containing protein.	Bac_surface_Ag domain-containing protein.	0.641
J3L2F6_ORYBR	J3MBK0_ORYBR	J3L2F6	J3MBK0	Peptidase_M50 domain-containing protein.	Peptidase_S8 domain-containing protein.	0.569
J3L2F6_ORYBR	J3MFY4_ORYBR	J3L2F6	J3MFY4	Peptidase_M50 domain-containing protein.	BZIP domain-containing protein.	0.546
J3L2F6_ORYBR	J3N1A7_ORYBR	J3L2F6	J3N1A7	Peptidase_M50 domain-containing protein.	Uncharacterized protein.	0.671
J3L2F6_ORYBR	J3N5C8_ORYBR	J3L2F6	J3N5C8	Peptidase_M50 domain-containing protein.	Bac_surface_Ag domain-containing protein.	0.641
J3L2F6_ORYBR	J3NAN5_ORYBR	J3L2F6	J3NAN5	Peptidase_M50 domain-containing protein.	Bac_surface_Ag domain-containing protein.	0.641
J3L600_ORYBR	J3L2F6_ORYBR	J3L600	J3L2F6	Alkyl transferase; Belongs to the UPP synthase family.	Peptidase_M50 domain-containing protein.	0.543
J3L6E8_ORYBR	J3L2F6_ORYBR	J3L6E8	J3L2F6	Dirigent protein; Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	Peptidase_M50 domain-containing protein.	0.543
J3LWK8_ORYBR	J3L2F6_ORYBR	J3LWK8	J3L2F6	BHLH domain-containing protein.	Peptidase_M50 domain-containing protein.	0.671
J3M816_ORYBR	J3L2F6_ORYBR	J3M816	J3L2F6	Uncharacterized protein.	Peptidase_M50 domain-containing protein.	0.641
J3M8R6_ORYBR	J3L2F6_ORYBR	J3M8R6	J3L2F6	Bac_surface_Ag domain-containing protein.	Peptidase_M50 domain-containing protein.	0.641
J3MBK0_ORYBR	J3L2F6_ORYBR	J3MBK0	J3L2F6	Peptidase_S8 domain-containing protein.	Peptidase_M50 domain-containing protein.	0.569
J3MBK0_ORYBR	J3MFY4_ORYBR	J3MBK0	J3MFY4	Peptidase_S8 domain-containing protein.	BZIP domain-containing protein.	0.565
J3MFY4_ORYBR	J3L2F6_ORYBR	J3MFY4	J3L2F6	BZIP domain-containing protein.	Peptidase_M50 domain-containing protein.	0.546
J3MFY4_ORYBR	J3MBK0_ORYBR	J3MFY4	J3MBK0	BZIP domain-containing protein.	Peptidase_S8 domain-containing protein.	0.565
J3N1A7_ORYBR	J3L2F6_ORYBR	J3N1A7	J3L2F6	Uncharacterized protein.	Peptidase_M50 domain-containing protein.	0.671