STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3L2S7_ORYBRUBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)    
Predicted Functional Partners:
J3M3J3_ORYBR
HECT domain-containing protein.
   
 0.903
J3M7Y2_ORYBR
HECT domain-containing protein.
   
 0.903
J3L8Q3_ORYBR
HECT domain-containing protein.
   
 0.895
J3M6U2_ORYBR
Uncharacterized protein.
    
 0.840
J3LN01_ORYBR
RING-type domain-containing protein.
    
 0.774
J3MPE6_ORYBR
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.747
J3N5D1_ORYBR
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.697
J3NAN6_ORYBR
Protein kinase domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.697
J3MPT7_ORYBR
Uncharacterized protein.
   
 0.695
J3M742_ORYBR
WPP domain-containing protein.
    
 0.689
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.