STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3L3F6_ORYBRTF-B3 domain-containing protein. (286 aa)    
Predicted Functional Partners:
J3MGG6_ORYBR
SBP-type domain-containing protein.
  
     0.522
J3M274_ORYBR
SBP-type domain-containing protein.
  
     0.516
J3LA42_ORYBR
SBP-type domain-containing protein.
  
     0.477
J3L5Y3_ORYBR
Homeobox domain-containing protein.
  
   
 0.463
J3M2C9_ORYBR
Homeobox domain-containing protein.
      
 0.459
J3M662_ORYBR
Uncharacterized protein.
      
 0.450
J3LE31_ORYBR
Uncharacterized protein.
  
     0.448
J3M071_ORYBR
SBP-type domain-containing protein.
  
     0.435
J3L3C5_ORYBR
BHLH domain-containing protein.
  
   
 0.422
J3L1Y6_ORYBR
Uncharacterized protein.
  
     0.417
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.