STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3L816_ORYBRDNA_mis_repair domain-containing protein. (618 aa)    
Predicted Functional Partners:
J3LEC6_ORYBR
Uncharacterized protein.
  
 
0.998
J3L4M6_ORYBR
Uncharacterized protein.
   
 0.995
J3M5K3_ORYBR
DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).
 
 0.994
J3M8J2_ORYBR
DNA_MISMATCH_REPAIR_2 domain-containing protein.
 
 0.991
J3KX05_ORYBR
DNA_MISMATCH_REPAIR_2 domain-containing protein.
 
 0.985
J3MXB1_ORYBR
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
 
 0.984
J3LZF0_ORYBR
DNA_MISMATCH_REPAIR_2 domain-containing protein.
  
 0.980
J3M2S4_ORYBR
DNA_MISMATCH_REPAIR_2 domain-containing protein.
 
 0.979
J3LI45_ORYBR
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.963
J3MKX6_ORYBR
Uncharacterized protein.
 
 0.962
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
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