Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
J3L7W1_ORYBR | J3LIG0_ORYBR | J3L7W1 | J3LIG0 | Uncharacterized protein. | DNL-type domain-containing protein. | 0.489 |
J3L7W1_ORYBR | J3LR96_ORYBR | J3L7W1 | J3LR96 | Uncharacterized protein. | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.628 |
J3LIG0_ORYBR | J3L7W1_ORYBR | J3LIG0 | J3L7W1 | DNL-type domain-containing protein. | Uncharacterized protein. | 0.489 |
J3LIG0_ORYBR | J3LR15_ORYBR | J3LIG0 | J3LR15 | DNL-type domain-containing protein. | Uncharacterized protein. | 0.588 |
J3LIG0_ORYBR | J3LR96_ORYBR | J3LIG0 | J3LR96 | DNL-type domain-containing protein. | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.571 |
J3LIG0_ORYBR | J3LXG8_ORYBR | J3LIG0 | J3LXG8 | DNL-type domain-containing protein. | Uncharacterized protein. | 0.443 |
J3LIG0_ORYBR | J3M2B3_ORYBR | J3LIG0 | J3M2B3 | DNL-type domain-containing protein. | Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. | 0.519 |
J3LIG0_ORYBR | J3MCF5_ORYBR | J3LIG0 | J3MCF5 | DNL-type domain-containing protein. | Uncharacterized protein. | 0.528 |
J3LIG0_ORYBR | J3MS72_ORYBR | J3LIG0 | J3MS72 | DNL-type domain-containing protein. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.538 |
J3LIG0_ORYBR | J3MS74_ORYBR | J3LIG0 | J3MS74 | DNL-type domain-containing protein. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.538 |
J3LIG0_ORYBR | J3MZF6_ORYBR | J3LIG0 | J3MZF6 | DNL-type domain-containing protein. | Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.520 |
J3LIG0_ORYBR | J3N5A2_ORYBR | J3LIG0 | J3N5A2 | DNL-type domain-containing protein. | Protein kinase domain-containing protein. | 0.589 |
J3LR15_ORYBR | J3LIG0_ORYBR | J3LR15 | J3LIG0 | Uncharacterized protein. | DNL-type domain-containing protein. | 0.588 |
J3LR15_ORYBR | J3M2B3_ORYBR | J3LR15 | J3M2B3 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. | 0.995 |
J3LR15_ORYBR | J3MCF5_ORYBR | J3LR15 | J3MCF5 | Uncharacterized protein. | Uncharacterized protein. | 0.996 |
J3LR15_ORYBR | J3MS72_ORYBR | J3LR15 | J3MS72 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.990 |
J3LR15_ORYBR | J3MS74_ORYBR | J3LR15 | J3MS74 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.990 |
J3LR15_ORYBR | J3MZF6_ORYBR | J3LR15 | J3MZF6 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.996 |
J3LR15_ORYBR | J3N5A2_ORYBR | J3LR15 | J3N5A2 | Uncharacterized protein. | Protein kinase domain-containing protein. | 0.981 |
J3LR96_ORYBR | J3L7W1_ORYBR | J3LR96 | J3L7W1 | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | Uncharacterized protein. | 0.628 |
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