STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3LIM3_ORYBRF-box domain-containing protein. (302 aa)    
Predicted Functional Partners:
J3LRV4_ORYBR
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.591
J3N278_ORYBR
YjeF N-terminal domain-containing protein.
   
 0.549
J3KV56_ORYBR
Uncharacterized protein.
    
 0.536
J3NF46_ORYBR
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.513
J3LNM9_ORYBR
Uncharacterized protein.
   
 0.511
J3MQU9_ORYBR
Sm domain-containing protein.
    
 0.511
J3N3S9_ORYBR
Uncharacterized protein.
   
 0.509
J3L2X7_ORYBR
Sde2_N_Ubi domain-containing protein.
   
 0.502
J3MKB7_ORYBR
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.495
J3LIM5_ORYBR
PSP domain-containing protein.
    
 0.485
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
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