STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3LP99_ORYBRtRNA pseudouridine synthase. (428 aa)    
Predicted Functional Partners:
J3LSS3_ORYBR
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.754
J3L4J8_ORYBR
TRUD domain-containing protein.
   
 
 0.739
J3M8R0_ORYBR
TRUD domain-containing protein.
   
 
 0.739
J3M8Y6_ORYBR
WD_REPEATS_REGION domain-containing protein.
   
  
 0.706
J3LGM6_ORYBR
SAM-dependent MTase TRM10-type domain-containing protein.
   
 
 0.703
J3M3T4_ORYBR
RPOLD domain-containing protein.
  
  
 0.698
J3MVK3_ORYBR
RPOLD domain-containing protein.
  
  
 0.698
J3MR08_ORYBR
Brix domain-containing protein.
   
    0.685
J3MWT0_ORYBR
Uncharacterized protein.
   
    0.684
J3MHF2_ORYBR
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
   
 
 0.682
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.