J3LS38_ORYBR protein (Oryza brachyantha) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

J3LS38_ORYBR

CASP_C domain-containing protein. (668 aa)

Predicted Functional Partners:

J3LN98_ORYBR

0.696

J3NDT3_ORYBR

0.696

J3M762_ORYBR

0.648

J3MVT0_ORYBR

0.576

J3L8Q9_ORYBR

0.570

J3LNU8_ORYBR

0.570

J3NBP4_ORYBR

0.570

J3M2Q7_ORYBR

0.569

J3NDY6_ORYBR

0.566

J3L988_ORYBR

0.530

Your Current Organism:

Oryza brachyantha

NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
J3L8Q9_ORYBR	J3LNU8_ORYBR	J3L8Q9	J3LNU8	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	TP_methylase domain-containing protein.	0.585
J3L8Q9_ORYBR	J3LS38_ORYBR	J3L8Q9	J3LS38	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	CASP_C domain-containing protein.	0.570
J3L8Q9_ORYBR	J3M2Q7_ORYBR	J3L8Q9	J3M2Q7	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.569
J3L8Q9_ORYBR	J3MVT0_ORYBR	J3L8Q9	J3MVT0	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.685
J3L8Q9_ORYBR	J3NBP4_ORYBR	J3L8Q9	J3NBP4	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.893
J3L988_ORYBR	J3LS38_ORYBR	J3L988	J3LS38	Uncharacterized protein.	CASP_C domain-containing protein.	0.530
J3L988_ORYBR	J3NDY6_ORYBR	J3L988	J3NDY6	Uncharacterized protein.	Uncharacterized protein.	0.976
J3LN98_ORYBR	J3LS38_ORYBR	J3LN98	J3LS38	Guanylate kinase-like domain-containing protein.	CASP_C domain-containing protein.	0.696
J3LN98_ORYBR	J3NDT3_ORYBR	J3LN98	J3NDT3	Guanylate kinase-like domain-containing protein.	Guanylate kinase-like domain-containing protein.	0.908
J3LN98_ORYBR	J3NDY6_ORYBR	J3LN98	J3NDY6	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.675
J3LNU8_ORYBR	J3L8Q9_ORYBR	J3LNU8	J3L8Q9	TP_methylase domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.585
J3LNU8_ORYBR	J3LS38_ORYBR	J3LNU8	J3LS38	TP_methylase domain-containing protein.	CASP_C domain-containing protein.	0.570
J3LNU8_ORYBR	J3M2Q7_ORYBR	J3LNU8	J3M2Q7	TP_methylase domain-containing protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.569
J3LNU8_ORYBR	J3MVT0_ORYBR	J3LNU8	J3MVT0	TP_methylase domain-containing protein.	Uncharacterized protein.	0.570
J3LNU8_ORYBR	J3NBP4_ORYBR	J3LNU8	J3NBP4	TP_methylase domain-containing protein.	Uncharacterized protein.	0.597
J3LS38_ORYBR	J3L8Q9_ORYBR	J3LS38	J3L8Q9	CASP_C domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.570
J3LS38_ORYBR	J3L988_ORYBR	J3LS38	J3L988	CASP_C domain-containing protein.	Uncharacterized protein.	0.530
J3LS38_ORYBR	J3LN98_ORYBR	J3LS38	J3LN98	CASP_C domain-containing protein.	Guanylate kinase-like domain-containing protein.	0.696
J3LS38_ORYBR	J3LNU8_ORYBR	J3LS38	J3LNU8	CASP_C domain-containing protein.	TP_methylase domain-containing protein.	0.570
J3LS38_ORYBR	J3M2Q7_ORYBR	J3LS38	J3M2Q7	CASP_C domain-containing protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.569