STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3LVW6_ORYBRF-box domain-containing protein. (404 aa)    
Predicted Functional Partners:
J3M066_ORYBR
Uncharacterized protein.
  
 
   0.529
J3MMN4_ORYBR
Uncharacterized protein.
  
 
  0.524
J3L3J3_ORYBR
FLZ-type domain-containing protein.
  
     0.503
J3LER4_ORYBR
Uncharacterized protein.
  
    0.496
J3LYM0_ORYBR
GTD-binding domain-containing protein.
  
 
 0.490
J3MZ98_ORYBR
Uncharacterized protein.
  
     0.488
J3LIU9_ORYBR
RING-type E3 ubiquitin transferase.
  
     0.486
J3M1I3_ORYBR
Remorin_C domain-containing protein.
  
     0.478
J3L8K2_ORYBR
C2H2-type domain-containing protein.
  
 
  0.474
J3NEL8_ORYBR
Uncharacterized protein.
  
 
   0.473
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.