STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3LWQ4_ORYBRPDZ_6 domain-containing protein. (535 aa)    
Predicted Functional Partners:
J3LUT4_ORYBR
PCI domain-containing protein.
    
 0.575
J3MU62_ORYBR
TPR_REGION domain-containing protein.
    
 0.539
J3LY84_ORYBR
PCI domain-containing protein.
    
 0.532
J3MAD4_ORYBR
RPN13_C domain-containing protein.
   
 0.506
J3MMW0_ORYBR
RING-type domain-containing protein.
     
 0.494
J3LM12_ORYBR
Uncharacterized protein.
    
 0.478
J3M184_ORYBR
26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
 0.478
J3MRB5_ORYBR
26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
 0.478
J3MRA0_ORYBR
PCI domain-containing protein.
   
 0.458
J3MAH8_ORYBR
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
    
 0.448
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
Server load: low (14%) [HD]