J3LXR1_ORYBR protein (Oryza brachyantha) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

J3LXR1_ORYBR

Uncharacterized protein. (770 aa)

Predicted Functional Partners:

J3MXL0_ORYBR

0.937

J3NA94_ORYBR

0.930

J3LI29_ORYBR

0.924

J3MRY5_ORYBR

0.924

J3LMD0_ORYBR

0.578

J3LLE1_ORYBR

0.575

J3MDN2_ORYBR

0.504

J3N8R1_ORYBR

0.486

J3MRP7_ORYBR

0.473

J3M0M9_ORYBR

0.456

Your Current Organism:

Oryza brachyantha

NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
J3LI29_ORYBR	J3LLE1_ORYBR	J3LI29	J3LLE1	Uncharacterized protein.	Uncharacterized protein.	0.926
J3LI29_ORYBR	J3LMD0_ORYBR	J3LI29	J3LMD0	Uncharacterized protein.	Glycos_transf_1 domain-containing protein.	0.926
J3LI29_ORYBR	J3LXR1_ORYBR	J3LI29	J3LXR1	Uncharacterized protein.	Uncharacterized protein.	0.924
J3LI29_ORYBR	J3MRY5_ORYBR	J3LI29	J3MRY5	Uncharacterized protein.	Uncharacterized protein.	0.901
J3LI29_ORYBR	J3MXL0_ORYBR	J3LI29	J3MXL0	Uncharacterized protein.	Uncharacterized protein.	0.901
J3LI29_ORYBR	J3NA94_ORYBR	J3LI29	J3NA94	Uncharacterized protein.	zf-RVT domain-containing protein.	0.935
J3LLE1_ORYBR	J3LI29_ORYBR	J3LLE1	J3LI29	Uncharacterized protein.	Uncharacterized protein.	0.926
J3LLE1_ORYBR	J3LXR1_ORYBR	J3LLE1	J3LXR1	Uncharacterized protein.	Uncharacterized protein.	0.575
J3LLE1_ORYBR	J3MRP7_ORYBR	J3LLE1	J3MRP7	Uncharacterized protein.	Uncharacterized protein.	0.521
J3LLE1_ORYBR	J3MRY5_ORYBR	J3LLE1	J3MRY5	Uncharacterized protein.	Uncharacterized protein.	0.926
J3LLE1_ORYBR	J3MXL0_ORYBR	J3LLE1	J3MXL0	Uncharacterized protein.	Uncharacterized protein.	0.942
J3LLE1_ORYBR	J3NA94_ORYBR	J3LLE1	J3NA94	Uncharacterized protein.	zf-RVT domain-containing protein.	0.918
J3LMD0_ORYBR	J3LI29_ORYBR	J3LMD0	J3LI29	Glycos_transf_1 domain-containing protein.	Uncharacterized protein.	0.926
J3LMD0_ORYBR	J3LXR1_ORYBR	J3LMD0	J3LXR1	Glycos_transf_1 domain-containing protein.	Uncharacterized protein.	0.578
J3LMD0_ORYBR	J3MDN2_ORYBR	J3LMD0	J3MDN2	Glycos_transf_1 domain-containing protein.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.414
J3LMD0_ORYBR	J3MRP7_ORYBR	J3LMD0	J3MRP7	Glycos_transf_1 domain-containing protein.	Uncharacterized protein.	0.521
J3LMD0_ORYBR	J3MRY5_ORYBR	J3LMD0	J3MRY5	Glycos_transf_1 domain-containing protein.	Uncharacterized protein.	0.926
J3LMD0_ORYBR	J3MXL0_ORYBR	J3LMD0	J3MXL0	Glycos_transf_1 domain-containing protein.	Uncharacterized protein.	0.942
J3LMD0_ORYBR	J3NA94_ORYBR	J3LMD0	J3NA94	Glycos_transf_1 domain-containing protein.	zf-RVT domain-containing protein.	0.925
J3LXR1_ORYBR	J3LI29_ORYBR	J3LXR1	J3LI29	Uncharacterized protein.	Uncharacterized protein.	0.924