STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3LYD6_ORYBRUncharacterized protein. (312 aa)    
Predicted Functional Partners:
J3MN39_ORYBR
RRM domain-containing protein.
  
 
 0.557
J3MTZ6_ORYBR
RRM domain-containing protein.
  
 
 0.540
J3MH78_ORYBR
RRM domain-containing protein.
  
 
 0.538
J3N6E9_ORYBR
RRM domain-containing protein.
  
 
 0.520
J3LEP4_ORYBR
Nuclear cap-binding protein subunit 2.
    
 0.473
J3LNQ4_ORYBR
MIF4G domain-containing protein.
    
 0.472
J3LBK4_ORYBR
Uncharacterized protein.
    
 0.461
J3LUC8_ORYBR
Uncharacterized protein.
  
 
 
 0.431
J3MSQ3_ORYBR
RRM domain-containing protein.
  
 
   0.424
J3LH94_ORYBR
RRM domain-containing protein.
  
 0.422
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
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