STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3LYM0_ORYBRGTD-binding domain-containing protein. (296 aa)    
Predicted Functional Partners:
J3MA76_ORYBR
Zinc_ribbon_12 domain-containing protein.
  
 
  0.566
J3LL11_ORYBR
OVATE domain-containing protein.
  
 
  0.560
J3L1Z7_ORYBR
Zinc_ribbon_12 domain-containing protein.
  
 
  0.559
J3N7V1_ORYBR
Uncharacterized protein.
  
   0.546
J3MPF9_ORYBR
Uncharacterized protein.
  
 
  0.545
J3L2U3_ORYBR
NAC domain-containing protein.
  
 
  0.529
J3L3S2_ORYBR
OVATE domain-containing protein.
  
     0.528
J3LER4_ORYBR
Uncharacterized protein.
  
 
   0.527
J3LKX1_ORYBR
FRIGIDA-like protein; Belongs to the Frigida family.
  
 
   0.525
J3LRI9_ORYBR
Uncharacterized protein.
  
     0.525
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
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