STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3LZ35_ORYBRUncharacterized protein. (768 aa)    
Predicted Functional Partners:
J3L9D5_ORYBR
Structural maintenance of chromosomes protein.
   
 0.973
J3MI37_ORYBR
Sister chromatid cohesion protein.
   
 0.956
J3NFF3_ORYBR
Structural maintenance of chromosomes protein.
   
 0.948
J3LUC0_ORYBR
Uncharacterized protein.
   
 0.922
J3LZA4_ORYBR
Uncharacterized protein.
   
 0.876
J3KUK0_ORYBR
SMC_N domain-containing protein.
   
 0.862
J3M8I3_ORYBR
Structural maintenance of chromosomes protein.
   
 0.862
J3N3R5_ORYBR
WAPL domain-containing protein.
    
 0.858
J3LHH6_ORYBR
Peptidase C50 domain-containing protein.
   
 0.846
J3MAF0_ORYBR
SMC_N domain-containing protein.
   
 0.840
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
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