STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3LZV9_ORYBRUncharacterized protein; Belongs to the DEAD box helicase family. (494 aa)    
Predicted Functional Partners:
J3N278_ORYBR
YjeF N-terminal domain-containing protein.
   
 0.989
J3MQU9_ORYBR
Sm domain-containing protein.
    
 0.987
J3N4T4_ORYBR
Uncharacterized protein.
   
 0.972
J3LPM8_ORYBR
Uncharacterized protein.
   
 0.954
LSM1
U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.
   
 0.954
J3LR84_ORYBR
Uncharacterized protein.
   
 0.931
J3LCW6_ORYBR
LsmAD domain-containing protein.
    
 
 0.924
J3MJS2_ORYBR
Uncharacterized protein.
   
 0.911
J3N650_ORYBR
Uncharacterized protein.
   
 0.911
J3NBH9_ORYBR
Uncharacterized protein.
   
 0.911
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.