TFIIAy-2 protein (Oryza brachyantha) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TFIIAy-2

Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)

Predicted Functional Partners:

J3M5M8_ORYBR

0.993

J3MSB5_ORYBR

0.976

J3LZG4_ORYBR

0.975

J3L982_ORYBR

0.970

J3MIX1_ORYBR

0.967

J3MS99_ORYBR

0.964

J3L2W8_ORYBR

0.961

J3L8Z0_ORYBR

0.960

J3MVK3_ORYBR

0.959

J3M3X5_ORYBR

0.957

Your Current Organism:

Oryza brachyantha

NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
J3L2W8_ORYBR	J3L8Z0_ORYBR	J3L2W8	J3L8Z0	TAFII28 domain-containing protein.	RPOL4c domain-containing protein.	0.931
J3L2W8_ORYBR	J3L982_ORYBR	J3L2W8	J3L982	TAFII28 domain-containing protein.	Uncharacterized protein.	0.914
J3L2W8_ORYBR	J3LZG4_ORYBR	J3L2W8	J3LZG4	TAFII28 domain-containing protein.	General transcription factor IIH subunit.	0.881
J3L2W8_ORYBR	J3M3X5_ORYBR	J3L2W8	J3M3X5	TAFII28 domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.914
J3L2W8_ORYBR	J3M5M8_ORYBR	J3L2W8	J3M5M8	TAFII28 domain-containing protein.	Uncharacterized protein.	0.946
J3L2W8_ORYBR	J3MIX1_ORYBR	J3L2W8	J3MIX1	TAFII28 domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.871
J3L2W8_ORYBR	J3MS99_ORYBR	J3L2W8	J3MS99	TAFII28 domain-containing protein.	Uncharacterized protein.	0.919
J3L2W8_ORYBR	J3MSB5_ORYBR	J3L2W8	J3MSB5	TAFII28 domain-containing protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.973
J3L2W8_ORYBR	J3MVK3_ORYBR	J3L2W8	J3MVK3	TAFII28 domain-containing protein.	RPOLD domain-containing protein.	0.935
J3L2W8_ORYBR	TFIIAy-2	J3L2W8	J3M385	TAFII28 domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.961
J3L8Z0_ORYBR	J3L2W8_ORYBR	J3L8Z0	J3L2W8	RPOL4c domain-containing protein.	TAFII28 domain-containing protein.	0.931
J3L8Z0_ORYBR	J3L982_ORYBR	J3L8Z0	J3L982	RPOL4c domain-containing protein.	Uncharacterized protein.	0.988
J3L8Z0_ORYBR	J3LZG4_ORYBR	J3L8Z0	J3LZG4	RPOL4c domain-containing protein.	General transcription factor IIH subunit.	0.991
J3L8Z0_ORYBR	J3M3X5_ORYBR	J3L8Z0	J3M3X5	RPOL4c domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.991
J3L8Z0_ORYBR	J3M5M8_ORYBR	J3L8Z0	J3M5M8	RPOL4c domain-containing protein.	Uncharacterized protein.	0.986
J3L8Z0_ORYBR	J3MIX1_ORYBR	J3L8Z0	J3MIX1	RPOL4c domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.998
J3L8Z0_ORYBR	J3MS99_ORYBR	J3L8Z0	J3MS99	RPOL4c domain-containing protein.	Uncharacterized protein.	0.990
J3L8Z0_ORYBR	J3MSB5_ORYBR	J3L8Z0	J3MSB5	RPOL4c domain-containing protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.992
J3L8Z0_ORYBR	J3MVK3_ORYBR	J3L8Z0	J3MVK3	RPOL4c domain-containing protein.	RPOLD domain-containing protein.	0.998
J3L8Z0_ORYBR	TFIIAy-2	J3L8Z0	J3M385	RPOL4c domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.960

page 1 of 6

Server load: low (14%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About