STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3M7Z6_ORYBRHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (86 aa)    
Predicted Functional Partners:
J3L6I0_ORYBR
Uncharacterized protein.
    
 0.910
J3M7A5_ORYBR
Uncharacterized protein.
    
 0.910
J3MWQ5_ORYBR
Histone acetyltransferase type B catalytic subunit.
    
 0.908
J3LPE6_ORYBR
Histone domain-containing protein.
   
 0.874
J3MD03_ORYBR
Uncharacterized protein.
    
 0.854
J3LL86_ORYBR
WD_REPEATS_REGION domain-containing protein.
    
 0.846
J3MBY1_ORYBR
Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.
    
 0.829
J3MQ70_ORYBR
Uncharacterized protein; Belongs to the actin family.
    
 0.823
J3KV76_ORYBR
Uncharacterized protein.
   
  0.821
J3MZQ6_ORYBR
Uncharacterized protein.
   
  0.821
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.