STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3MQC8_ORYBRUncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (392 aa)    
Predicted Functional Partners:
J3L0A1_ORYBR
Tyrosine--tRNA ligase.
    
 0.938
J3MP31_ORYBR
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 
0.903
J3MS29_ORYBR
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 
0.900
J3MEJ6_ORYBR
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.777
J3N2G1_ORYBR
tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.777
J3M9N0_ORYBR
B5 domain-containing protein.
  
  
 0.718
J3M482_ORYBR
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.664
J3MXK5_ORYBR
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
  
  
 0.664
J3LHM6_ORYBR
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.663
J3NDW2_ORYBR
Uncharacterized protein.
  
  
 0.661
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
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