Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
J3L118_ORYBR | J3MQL6_ORYBR | J3L118 | J3MQL6 | PITH domain-containing protein. | Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. | 0.440 |
J3L118_ORYBR | J3MYC3_ORYBR | J3L118 | J3MYC3 | PITH domain-containing protein. | Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...] | 0.440 |
J3L118_ORYBR | J3N3D8_ORYBR | J3L118 | J3N3D8 | PITH domain-containing protein. | DUF1681 domain-containing protein. | 0.467 |
J3MQL6_ORYBR | J3L118_ORYBR | J3MQL6 | J3L118 | Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. | PITH domain-containing protein. | 0.440 |
J3MQL6_ORYBR | J3MYC3_ORYBR | J3MQL6 | J3MYC3 | Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. | Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...] | 0.440 |
J3MQL6_ORYBR | J3N3D8_ORYBR | J3MQL6 | J3N3D8 | Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. | DUF1681 domain-containing protein. | 0.440 |
J3MYC3_ORYBR | J3L118_ORYBR | J3MYC3 | J3L118 | Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...] | PITH domain-containing protein. | 0.440 |
J3MYC3_ORYBR | J3MQL6_ORYBR | J3MYC3 | J3MQL6 | Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...] | Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. | 0.440 |
J3MYC3_ORYBR | J3N3D8_ORYBR | J3MYC3 | J3N3D8 | Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...] | DUF1681 domain-containing protein. | 0.440 |
J3N3D8_ORYBR | J3L118_ORYBR | J3N3D8 | J3L118 | DUF1681 domain-containing protein. | PITH domain-containing protein. | 0.467 |
J3N3D8_ORYBR | J3MQL6_ORYBR | J3N3D8 | J3MQL6 | DUF1681 domain-containing protein. | Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. | 0.440 |
J3N3D8_ORYBR | J3MYC3_ORYBR | J3N3D8 | J3MYC3 | DUF1681 domain-containing protein. | Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...] | 0.440 |